| Systematic name |
Given name |
Comments |
Reference |
Date |
| SPAC19B12.05c |
|
additional exon |
pers. comm. Val Wood |
2003-04-22 |
| SPAC11E3.03 |
pcs1 |
N terminal truncated, removed exon 9067..9103, truncated from 9149 to 9211 start |
PMID: 12689592 |
2003-04-13 |
| SPCC320.13c |
ark1 |
trimmed to 2nd met |
PMID: 12676091 |
2003-01-08 |
| SPBC6B1.09c |
nbs1 |
prediction extended by 4 N- terminal exons, this identified FHA domain |
pers. comm. Val Wood |
2002-04-22 |
| SPBC6B1.09c |
nbs1 |
additional intron 25664..25705, and exon extension 25974..25988 |
pers. comm. Charly Chahwan |
2003-03-07 |
| SPAC16A10.04 |
rho4 |
N-terminal exon replaced |
PMID: 12653963 |
2003-03-31 |
| SPAC23C4.08 |
rho3 |
N-terminal exon removed |
PMID: 12653963 |
2003-03-31 |
| SPBP23A10.04 |
apc2 |
coordinates updated additional in-frame splice at 5325,5371 |
pers. comm. Hyun-Joo Yoon |
2003-02-04 |
| SPCC1442.13c |
|
C terminal exon added ; old coordinates (26947..27936); new exon extends G-patch domain |
pers. comm. Val Wood |
2002-04-15 |
| SPBC1604.17c |
|
previous coordinates (8945..8971,9475..10455,10528..10851) |
pers. comm. Val Wood |
2002-04-29 |
| SPAC1296.04 |
|
has 2 additional N-terminal exons |
pers. comm. Val Wood |
|
| SPAC23C11.10 |
|
found 3 additional C-terminal exons by eye |
pers. comm. Val Wood |
2002-06-18 |
| SPBC1347.05c |
|
new C-terminal exon |
pers. comm. Val Wood |
2002-10-11 |
| SPAC2F3.12c |
|
created from the C-terminal of SPAC2F3.13c |
pers. comm. Val Wood |
2002-06-30 |
| SPAC2F3.13c |
|
split to create SPAC2F3.13c and SPAC2F3.12c |
pers. comm. Val Wood |
2002-06-30 |
| SPAC22F3.03c |
rdh54 |
4th exon extended by altering acceptor in intron 3 cosmid coordinates 34092-33923 |
pers. comm. Mike Catlett |
2003-05-09 |
| SPAC29A4.14c |
|
N-terminal extended |
pers. comm. Val Wood |
2002-09-11 |
| SPAC31G5.07 |
|
N terminal extended to use longest ORF in the absence of homology |
pers. comm. Henar Valdivieso Montero |
2003-01-08 |
| SPAC2F3.13c |
|
annotated as SPAC2F3.13c putative tRNA-ribosyltransferase, but actually a gene merge. Split to create SPAC2F3.13c the tRNA-ribosyltransferase and new CDS SPAC2F3.17c was created from the C-terminal |
pers. comm. Val Wood |
2003-06-30 |
| SPAC29B12.08 |
|
new N-terminal exon |
pers. comm. Aengus Stewart |
2003-09-09 |
| SPAC959.05c |
|
extended N-terminal to first methionine |
pers. comm. Val Wood |
2003-09-14 |
| SPBC15D4.02 |
|
trimmed N terminal 28.10.03; looked overextended as large low complexity region in front in zinc finger which is usually N-term; alignment looks better |
pers. comm. Val Wood |
2003-10-28 |
| SPCC777.02 |
|
replaced N terminal exon with 2 better exons, still not sure its correct but it looks better |
pers. comm. Val Wood |
2003-10-28 |
| SPBC30B4.01c |
|
extended gene prediction at the N-term by 30 amino acids to include hydrophobic segment which is proably a signal peptide (S. cerevisiae orthologs all have sig peps) |
pers. comm. Val Wood |
2003-11-12 |
| SPBC428.01c |
nup107 |
alternative N terminal exon, and alteration to first intron acceptor adds 16 amino acids |
pers. comm. Valerie Doye |
2003-11-13 |
| SPAC27D7.12c |
|
extended N-term to use first MET as start |
PMID: 14623327 |
2003-11-24 |
| SPCC622.17 |
apn1 |
added back in frame splice confirmed by paper below was in original prediction, but removed because it disagreed with mRNA |
PMID: 14704348 |
2004-01-12 |
| SPAC1002.01 |
|
detected orthology with YPL041C and added small C-term exon to extend |
pers. comm. Val Wood |
2004-02-10 |
| SPAC6B12.06c |
|
deleted Adenine at 13981, extended gene prediction from 64 aa to 117 AA |
pers. comm. Val Wood |
2004-04-02 |
| SPCC622.17 |
apn1 |
Added back 2 N-terminal exons removed because they didn't agree with SP33625; since confirmed by paper; later removed by original authors |
PMID: 14704348 |
2004-04-13 |
| SPBC16D10.07c |
sir2 |
gene structure updated, extended N-term by 9 amino acids, moved 1st splice site downstream by 15 bases |
pers. comm. T. Laurenson 18-6-04 |
2004-06-18 |
| SPAC14C4.09 |
agn1 |
extended by 22 amino acids at N-term |
PMID: 15194814 |
2004-06-25 |
| SPBC20F10.04c |
rad62/nse4 |
2 N-terminal exons replaced with better exons, C-terminal exon truncated and two extra C-terminal exons added according to EMBL entry |
EMBL: AB158548 |
2004-08-06 |
| SPAC16E8.10c |
|
extended to include potential mitochondrial signal peptide |
pers. comm. Lynda Groocock |
2004-08-11 |
| SPBC30D10.04 |
swi3 |
updated coordinates with respect to Swissprot: Q6IUU5, added N terminal exon |
EMBL: AY623652 |
2004-08-16 |
| SPCC553.07c |
|
added missed C-terminal exon |
pers. comm. Charly Chahwan |
2004-08-29 |
| SPBC646.06c |
agn2 |
had the TAG stop codon changes to TAT which lengthened CDS from 407 to 433a.a. |
pers. comm. Frans Hochstenbach; confirmed by PCR Kathy Seeger |
2004-09-30 |
| SPCC1235.15 |
dga1 |
Correction to non-canonical donor and acceptor |
pers. comm. Jan Dungan |
2003-11-19 |
| SPAC12G12.13c |
cid14 |
extended gene prediction N-term by 68 amino acids to use first in-frame AUG in agreement with transcript data |
pers. comm. Chris Norbury |
2005-04-13 |
| SPAC26H5.02c |
|
updated sequence to add 4th intron at 2133,2174; changed frame of final exon |
pers. comm. Stuart MacNeill |
2005-04-19 |
| SPCC550.05 |
nse1 |
gene structure updated to add intron and C-term exon |
PMID: 12966087 |
2005-04-26 |
| SPAC26H5.02c |
nse2 |
second intron extended to 115 nt |
PMID: 15601841 |
2005-06-20 |
| SPAC1093.04c |
|
N term truncated to use 2nd inframe Met as initiator to give MAS sequence start instead of MCI, also more similar in length to potential orthologs |
pers. comm. Val Wood |
2005-06-30 |
| SPNCRNA.69 |
tos1 |
remapped to correct coordinates |
pers. comm. Jurg Bahler |
2005-07-05 |
| SPNCRNA.131 |
tos2 |
remapped to correct coordinates |
pers. comm. Jurg Bahler |
2005-07-05 |
| SPNCRNA.132 |
tos3 |
remapped to correct coordinates |
pers. comm. Jurg Bahler |
2005-07-05 |
| SPAC9E9.17c |
|
new coordinates; gene prediction extended, two new exons |
pers. comm. Val Wood |
2005-08-29 |
| SPCC1223.15c |
spc19 |
4 amino acid extension at N-terminus |
PMID: 16079914 |
2005-09-09 |
| SPAC17H9.20 |
psc3 |
added intron at 37250..37297 |
PMID: 16207082 |
2005-10-10 |
| SPAC31G5.06 |
|
added N-teminal exon to extend prediction |
pers. comm. Val Wood |
2005-11-01 |
| SPAC9.05 |
mfh1 |
second intron acceptor extended by 15 bp |
pers. comm. Anke Schürer |
2006-01-19 |
| SPBC3B9.22c |
dad4 |
added new C-terminal exon based on Pfam protein family |
Pfam |
2006-02-01 |
| SPCC4G3.05c |
mus81 |
added N terminal exon |
pers. comm. Fred Kippert |
2006-02-17 |
| SPAC1D4.11c |
lkh1 |
lengthened to 690 a.a. |
PMID: 12565823 |
2006-04-12 |
| SPBCPT2R1.08c |
tlh2 |
truncated to 1919 a.a.; removed truncated version of a malate transporter fused to gene, not known whether these residues are included in translation |
pers. comm. Liew Li Phing |
2006-04-13 |
| SPAC6G9.13c |
bqt1 |
Additional C terminal exon |
PMID: 16615890 |
2006-05-03 |
| SPAC21E11.05c |
cyp8 |
Single base insertion allowed first 2 exons to be merged and extended (GAGT[G]GCA) |
pers. comm. Trevor Pemberton (via Ivo Pedruzzi, UniProt) |
2006-05-22 |
| SPCPJ732.03 |
meu15 |
new coordinates as per publication |
PMID: 11376151 |
2006-06-12 |
| SPCC4B3.05c |
hem12 |
Coordinates updated from join(28064..28097, 28155..28189, 28238..28816, 28866..29330) to join(28064..28097,28155..28189,28236..28260,28308..28816,28866..29330). Improves Homology |
pers. comm. Val Wood |
2006-06-12 |
| SPAC12D12.09 |
rev7 |
added new exon to insert KCIDIFGEF |
pers. comm. Nicole Kosarek |
2006-08-01 |
| SPAC12D12.09 |
rev7 |
truncated punultimate exon to remove GIN |
pers. comm. Nicole Kosarek |
2006-08-01 |
| SPBC30B4.08 |
eri1 |
gene structure updated as per PMID: 16797182 |
PMID: 16797182 |
2006-09-22 |
| SPAPB17E12.08 |
|
coordinates updated from join(9968..9990,10070..10442) to join(9609..9623,9699..9761,9937..9986,10070..10442). Improved homology |
pers. comm. Val Wood |
2006-12-12 |
| SPCC1223.10c |
eaf1 |
Added exons as per PMID: 17150956 |
PMID: 17150956 |
2006-12-14 |
| SPBP22H7.09c |
mis15 |
updated sequence coordinates as per PMID: 15369671 |
PMID: 15369671 |
2007-01-05 |
| SPAC23D3.08 |
usp108 |
final exon removed |
pers. comm. Val Wood |
2007-02-05 |
| SPNCRNA.82 |
mrp1 |
coordinates updated from 1234705..1234837 to 1234451..1234849, upon realisation that this corresponded to RNase MRP |
pers. comm. Val Wood |
2007-02-07 |
| SPAC13G7.07 |
|
changed second exon 3' boundary and added C-terminal exons |
PMID: 17310250 |
2007-03-23 |
| SPAC29E6.04 |
nnf1 |
Sequence frameshifted at 4410192, new coordinates give an N terminal extension from 4410194..4410391 (NOTE: Still needs resequencing and underlying sequence changing) |
PMID: 17035632 |
2007-05-16 |
| SPAC23C4.04c |
|
altered to include stop codon and trimmed to methionine |
pers. comm. Val Wood |
2007-06-19 |
| SPBC409.12 |
stn1 |
N-terminal extended by 2 exons |
pers. comm. C. Chahwan |
2007-07-06 |
| SPAC9E9.02 |
|
altered to include stop codon |
pers. comm. Val Wood |
2007-07-19 |
| SPAC22F8.07c |
rtf1 |
Two in frame splices added |
EMBL:AJ627891 |
2007-08-28 |
| SPCC1020.11c |
|
coordinates updated from 757494..757802 to join(757365..757424,757506..757802) |
Solexa transcript data |
2007-10-12 |
| SPCC1529.01 |
|
new exon added; coordinates changed from join(237554..237923 , 237975..238080 , 238139..238533 , 238588..239105) to join(237554..237923,237975..238080,238139..238533,238588..239092,239151..239250) |
Solexa transcript data |
2007-10-12 |
| SPBPB2B2.07c |
|
coordinates updated from 4474434..4474931 to join(4474145..4474403,4474438..4474931) |
Solexa transcript data |
2007-11-22 |
| SPAC6G9.16c |
|
coordinates changed from 3278951..3279349 to join(3278951..3279367,3279420..3279539,3279683..3279819,3279865..3279985) |
Solexa transcript data |
2007-11-22 |
| SPBC354.07c |
|
additional exon added; coordinates updated from 558335..559225,559273..559474,559942..560028,560151..560170 to 558335..559225,559273..559474,559942..560028,560151..560163,560231..560246 |
Solexa transcript data |
2007-11-28 |
| SPAC631.02 |
|
coordinates updated from 2107940..2110123 to 2107470..2107515,2107860..2110123 |
Solexa transcript data |
2007-11-28 |
| SPCC18.18c |
|
coordinates changed from 1988631..1990079 to 1988631..1990100,1990630..1990722 |
Solexa transcript data |
2007-11-29 |
| SPAC16A10.06c |
|
revised intron structure/original intron absent from Solexa data; coordinates updated from 3089583..3089996,3090112..3090285,3090533..3090697 to 3089583..3090047,3090112..3090285,3090533..3090697 |
Solexa intron data |
2007-12-02 |
| SPAC17C9.08 |
|
revised intron structure/original intron absent from Solexa data and unsupported from mRNA data so final exon deleted; coordinates changed from 4484758..4484804,4484843..4485274,4485350..4485596,4485713..4485994 to 4484835..4485274,4485350..4485596,4485713..4485994 |
Solexa intron data |
2007-12-02 |
| SPAPB17E12.08 |
|
revised intron structure/original intron absent from Solexa data so small N-term exon deleted; coordinates changed from 1279492..1279506,1279582..1279644,1279820..1279869,1279953..1280325 to 1279573..1279644,1279820..1279869,1279953..1280325 |
Solexa intron data |
2007-12-02 |
| SPAPB1A10.15 |
|
revised intron structure/original intron absent from Solexa data so small C-term exon deleted; coordinates changed from 1892554..1892640,1892926..1893060,1893098..1893504,1893585..1893618 to 1892554..1892640,1892926..1893060,1893098..1893694 |
Solexa intron data |
2007-12-02 |
| SPAC56F8.05c |
|
revised intron structure/original intron absent from Solexa data. N terminal exon unsupported and had no branch site so exon deleted; coordinates changed from 1134697..1135061,1135195..1135402,1135517..1135684,1135729..1135776,1135932..1135970,1136111..1136170 to 1134697..1135061,1135195..1135402,1135517..1135684,1135729..1135776,1135932..1136003 |
Solexa intron data |
2007-12-02 |
| SPCC1450.09c |
|
original intron absent from Solexa data; C terminal exon unsupported so exon deleted; coordinates changed from 1741451..1741481,1741589..1743459 to 1741588..1743459 |
Solexa intron data |
2007-12-02 |
| SPCC736.05 |
wtf7 |
removed final exon, unsupported by Solexa intron data; coordinates changed from 320617..320755,320964..321335,321387..321509,321554..321582 to 320617..320755,320964..321335,321387..321523 |
Solexa intron data |
2007-12-02 |
| SPAC227.11c |
|
removed final exon, unsupported by Solexa data; coordinates changed from 514434..514489,514557..515082,515222..515482,515534..515659 to 514552..515082,515222..515482,515534..515659 |
Solexa intron data |
2007-12-02 |
| SPBC21B10.02 |
|
intron unsupported by Solexa transcript data, removed final exon; coordinates changed from 1669624..1669695,1669737..1670144 to 1669719..1670144 |
Solexa intron data |
2007-12-02 |
| SPBC21C3.07c |
|
removed final exon, not supported by Solexa transcript data; coordinates changed from 3807714..3807783,3807963..3808607,3808665..3808795 to 3807920..3808607,3808665..3808795 |
Solexa intron data |
2007-12-02 |
| SPBC29A3.07c |
|
final exon deleted, not supported by Solexa intron data; homology improved; coordinates changed from 2050069..2050183,2050304..2050358,2050452..2050695 to 2050258..2050358,2050452..2050695 |
Solexa intron data |
2007-12-02 |
| SPBC1604.17c |
|
updated, better donor (GTAATA instead of GTTAGT); original intron prediction not supported by Solexa data; coordinates changed from 3900047..3900121,3900166..3901146,3901219..3901542 to 3900047..3900121,3900166..3901170,3901219..3901542 |
Solexa intron data |
2007-12-02 |
| SPBC16A3.14 |
|
final exon deleted, not supported by Solexa intron data; coordinates changed from 4270907..4270939,4271137..4271937 to 4271131..4271937 |
Solexa intron data |
2007-12-02 |
| SPAC23D3.08 |
usp108 |
final exon deleted, not supported by Solexa intron data; coordinates changed from 4352514..4353359,4353410..4353573,4353623..4353761 to 4352514..4353359,4353410..4353577 |
Solexa intron data |
2007-12-02 |
| SPAC4C5.01 |
|
altered intron 5 to improve donor and acceptor, improves homology; coordinates changed from 1192545..1192592,1192662..1192704,1192779..1192841,1192916..1193010,1193062..1193175,1193236..1193613 to 1192545..1192592,1192662..1192704,1192779..1192841,1192916..1193010,1193062..1193145,1193197..1193613 |
Solexa intron data |
2007-12-03 |
| SPBC16H5.04 |
|
altered intron 2 donor and acceptor, improved homology; coordinates changed from 2293393..2293824,2293938..2294039,2294087..2294125 to 2293393..2293775,2293877..2294039,2294087..2294125 |
Solexa intron data |
2007-12-03 |
| SPBC11B10.03 |
|
removed N-teminal exon, poor donor, did not improve homology; coordinates changed from 1490376..1490423,1490593..1491747 to 1490611..1491747 |
Solexa intron data |
2007-12-03 |
| SPAPB1A10.03 |
|
SPAPB1A10.03 split to create SPAPB1A10.03 and SPAPB1A10.16; new coordinates 1863363..1863381,1863434..1863762 and 1863972..1864388 |
Solexa intron data |
2007-12-03 |
| SPCC1494.02 |
|
2 C-terminal exons removed, not supported by homology; coordinates changed from 2317988..2318068,2318200..2318244,2318398..2318508,2318579..2318676,2318903..2318966 to 2318335..2318508,2318579..2318676,2318903..2318966 |
Solexa intron data |
2007-12-03 |
| SPCC1442.13c |
|
deleted final exon, improved homology; coordinates changed from 1791196..1791285,1791376..1791909 to 1791346..1791909 |
Solexa intron data |
2007-12-03 |
| SPCC622.14 |
|
altered donor for intron 3, improved donor consensus; coordinates changed from 1427098..1427310,1427632..1427709,1427788..1428180,1428277..1428522 to 1427098..1427310,1427632..1427709,1427788..1428216,1428277..1428522 |
Solexa intron data |
2007-12-03 |
| SPAC823.04 |
|
changed first intron acceptor, which gave a different n-term exon and improved homology; coordinates changed from 2587859..2587901,2588085..2588620 to 2587729..2587897,2588085..2588620 |
Solexa intron data |
2007-12-03 |
| SPAC688.08 |
|
deleted final exon, not supported by Solexa data; coordinates changed from 3123163..3125057,3125099..3126310,3126356..3126631,3126671..3126989 to 3123163..3125057,3125099..3126310,3126356..3126653 |
Solexa intron data |
2007-12-03 |
| SPAC29E6.03c |
|
changed internal splice site, better intron, slightly improved homology; deleted final small exon, unsupported; coordinates changed from 4405871..4405889,4405994..4407291,4407447..4409096,4409171..4409338 to 4405990..4407375,4407447..4409096,4409171..4409338 |
Solexa intron data |
2007-12-03 |
| SPAC806.09c |
|
changed from 251726..252337,252392..252752,252945..252958 to 251726..252337,252392..252752,253590..253630 |
Solexa transcript data |
2007-12-07 |
| SPBC19G7.06 |
|
coordinates changed from 2359429..2359479,2359547..2359693,2359845..2359928,2360064..2361092 to 2359429..2359479,2359547..2359693,2359845..2359928,2360001..2361092 |
Christopher J. McInerny |
2007-12-07 |
| SPBC16D10.10 |
|
exon 4 splice altered; coordinates changed from 3618117..3618179,3618228..3618617,3618658..3618702,3618747..3618920,3619065..3619321,3619366..3619540 to 3618117..3618179,3618228..3618617,3618658..3618702,3618747..3618971,3619077..3619321,3619366..3619540 |
Solexa intron data |
2007-12-07 |
| SPBC16E9.16c |
|
This CDS has 2 frameshifts in GeneDB at present; coordinates changed from 1947985..1949069 , 1949218..1950058 , 1950253..1950255 to 1947985..1948953,1948955..1950050,1950053..1950255 |
PMID: 18079165 |
2007-01-03 |
| SPBC16C6.02c |
|
complement(join(4322221..4322742,4322970..4331555,4331641..4331793,4331856..4331968,4332007..4332028)) was split into complement(join(4322829..4331555,4331641..4331793,4331856..4331968,4332007..4332028)) and new gene SPBC16C6.14 - complement(4322221..4322622) |
PMID: 18367542 |
2008-04-02 |
| SPAC13G6.04 |
tim8 |
old join(180423..180528,180586..180776), new join(180423..180528,180586..180721,180890..180911); added new 3' intron/exon, improved homology |
Solexa transread data |
2008-05-02 |
| SPAC1639.01c |
|
old complement(join(251726..252337,252392..252752,253590..253630)), new complement(join(251726..251745,251863..252337,252392..252752,253590..253630)); added new 3' intron/exon
|
Solexa transread data |
2008-05-02 |
| SPAC630.11 |
vps55 |
old join(366801..366817,366873..366891,366968..367040,367123..367189,367293..367348,367395..367531), new join(366801..366817,366873..366891,366968..367040,367105..367189,367293..367348,367395..367531); changed internal intron acceptor, improved homology
|
Solexa transread data |
2008-05-02 |
| SPAC24H6.01c |
|
old join(490016..490262,490338..490771,490812..490931,490979..491149,491186..491980), new join(490016..490262,490338..490771,490812..490931,490979..491149,491186..491858,491905..492011); added new 3' intron/exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPAC23C4.04c |
|
old 1036033..1036347, new join(1036033..1036342,1036397..1036455); added intron
|
Solexa transread data |
2008-05-02 |
| SPAC1A6.03c |
|
old complement(1070139..1072013), new complement(join(1070061..1070138,1070205..1072013)); new 3' intron/exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPAC56F8.04c |
coq2 |
old complement(1133226..1134302), new complement(join(1133226..1134283,1134332..1134356)); added 5' intron/exon,
|
Solexa transread data |
2008-05-02 |
| SPAPB17E12.08 |
|
old join(1279573..1279644,1279820..1279869,1279953..1280325), new join(1279573..1279779,1279820..1279869,1279953..1280325); changed first donor to make n-terminal exon longer, improved homology
|
Solexa transread data |
2008-05-02 |
| SPAC9.06c |
|
old complement(join(1473692..1473885,1473939..1474105,1474153..1474212,1474264..1474341,1474460..1474539)), new complement(join(1473692..1473885,1473939..1474105,1474153..1474212,1474264..1474341,1474381..1474404,1474460..1474539)); added new exon (2nd) improved homology
|
Solexa transread data |
2008-05-02 |
| SPAC17A5.02c |
dbr1 |
old complement(join(1754109..1754310,1754350..1755118,1755164..1755285,1755331..1755638)), new complement(join(1754033..1754145,1754186..1754310,1754350..1755118,1755164..1755285,1755331..1755638)); added new 5'intron/exon, now agrees with published date
|
Solexa transread data |
2008-05-02 |
| SPAPB1A10.16 |
|
old 1863972..1864388, new join(1863972..1864360,1864415..1864457); added new 3' intron/exon
|
Solexa transread data |
2008-05-02 |
| SPAC823.04 |
|
old 2587729..2587897 , 2588085..2588620, new join(2587729..2587897,2588106..2588620); altered to use valid acceptor
|
Solexa transread data |
2008-05-02 |
| SPAC823.09c |
|
old complement(join(2594922..2595693,2595734..2595819)), new complement(join(2594777..2594913,2594966..2595693,2595734..2595819)); added new 3' intron/exon
|
Solexa transread data |
2008-05-02 |
| SPAPB2B4.06 |
|
old join(2722735..2723210,2723273..2723300,2723349..2723582), new join(2722735..2723210,2723273..2723300,2723349..2723559,2723608..2723660); added new 3' intron/exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPAC16E8.12c |
|
old complement(join(3523136..3523644,3524027..3524030)), new complement(join(3523136..3523644,3523925..3523996,3524044..3524098)); added 2 5' exons |
Solexa transread data |
2008-05-02 |
| SPAC15A10.10 |
|
old join(3697508..3697752,3697795..3698368,3698421..3698527,3698570..3699538,3699582..3699837), new join(3697508..3697752,3697795..3698368,3698421..3698527,3698570..3699310,3699359..3699538,3699582..3699837); added in frame intron
|
Solexa transread data |
2008-05-02 |
| SPAC1556.01c |
rad50 |
old complement(join(3791855..3792229,3792267..3795557,3795601..3795684,3795734..3795856)), new complement(join(3791831..3791851,3791891..3792229,3792267..3795557,3795601..3795684,3795734..3795856)); added small 3' intron and exon |
Solexa transread data |
2008-05-02 |
| SPAC1556.03 |
azr1 |
old join(3799244..3799680,3799731..3800160), new join(3799244..3799680,3799731..3800135,3800184..3800241); added new 5' intron and exon/improved homology
|
Solexa transread data |
2008-05-02 |
| SPAC1F12.08 |
|
old join(3817464..3817803,3817851..3817991,3818035..3818543), new join(3817464..3817803,3817851..3817991,3818035..3818130,3818170..3818543); added new intron, inframe splice in final exon, improved homology |
Solexa transread data |
2008-05-02 |
| SPAC2F3.18c |
|
old 3942398..3942730 new 3942299..3942364,3942506..3942730; added small N term in frame intron |
Solexa transread data |
2008-05-02 |
| SPAC2C4.11c |
rpb28 |
old complement(4278729..4279505), new complement(join(4278729..4279405,4279457..4279505)); added small N term in frame intron |
Solexa transread data |
2008-05-02 |
| SPAC30.03c |
tsn1 |
old join(4394707..4394741,4394799..4394967,4395010..4395092,4395131..4395491,4395530..4395592), new complement(join(4394707..4394741,4394799..4394967,4395010..4395092,4395131..4395367,4395416..4395491,439
5530..4395592)); added in-frame intron to (previous) 2nd exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPAC30C2.05 |
erv14 |
old complement(join(4687483..4688462,4688513..4688831)), new complement(join(4687388..4687477,4687522..4688462,4688513..4688831)); added new 5' intron/exon, improved homology |
Solexa transread data |
2008-05-02 |
| SPAC144.17c |
|
old complement(join(4687483..4688462,4688513..4688831)), new complement(join(4687388..4687477,4687522..4688462,4688513..4688831)); added 3' intron and exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPAC4F10.08 |
mug126 |
old join(4844855..4845824,4845863..4846203), new join(4844855..4845824,4845863..4846063,4846104..4846129); added new 3' intron/exon |
Solexa transread data |
2008-05-02 |
| SPAC890.07c |
rmt1 |
old complement(join(5016072..5016215,5016262..5016596,5016649..5016943,5016994..5017059,5017138..5017252,5017421..5017433,5017700..5017703,5017782..5017829)), new complement(join(5016020..5016026,5016076..5016215,5016262..5016596,5016649..5016943,5016994..5017059,5017138..5017252,5017421..5017433,5017700..5017703,5017782..5017829); added small N terminal exon, which added a single conserved cysteine
|
Solexa transread data |
2008-05-02 |
| SPAC22E12.10c |
etp1 |
old complement(5037208..5039103), new complement(join(5037208..5037446,5037492..5039103)); added in-frame splice |
Solexa transread data |
2008-05-02 |
| SPBC106.05c |
tim11 |
old complement(join(383527..383612,383703..383874,383980..384012)), new complement(join(383527..383612,383703..383874,383940..383960)); changed 5' exon
|
Solexa transread data |
2008-05-02 |
| SPBC582.04c |
|
old complement(join(423269..423598,423669..423738,423782..423871,423912..424373,424424..424872,424921..425160,425223..425350,425410..425446)), new complement(join(423269..423598,423669..423738,423782..423871,423912..424373,424424..424692,424747..424872,424921..425160,425223..425350,425410..425446)); added inframe intron to (existing) exon 3 |
Solexa transread data |
2008-05-02 |
| SPBC947.03c |
|
old 676629..676931, new join(676629..676908,677057..677127); added 5' inton/exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPBPJ4664.05 |
|
old 706175..706666, new join(705932..706077,706141..706666); added new 5' intron and exon, improved homology |
Solexa transread data |
2008-05-02 |
| SPBC4.02c |
|
old complement(join(1185617..1186640,1186738..1186846,1187087..1187324)), new complement(join(1185617..1186640,1186738..1186846,1187087..1187162,1187220..1187324)); added inframe splice to first (existing) exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPBC8D2.17 |
|
old 1390183..1391238, new join(1390183..1391093,1391147..1391222); added new 3' intron/exon |
Solexa transread data |
2008-05-02 |
| SPBC4.02c |
|
old complement(join(2369064..2369160,2369246..2369416,2369455..2371243,2371351..2371451,2371507..2371583)), new complement(join(2369064..2369190,2369246..2369416,2369455..2371243,2371351..2371451,2371507..2371583)); changed accceptor for final intron, improved homology
|
Solexa transread data |
2008-05-02 |
| SPBP4H10.12 |
|
old join(2895855..2895863,2896001..2896507), new join(2895855..2895863,2896001..2896459,2896516..2896587); added new 3' intron/exon, improved homology |
Solexa transread data |
2008-05-02 |
| SPBC2A9.07c |
|
old complement(2959078..2959902), new complement(join(2959078..2959129,2959172..2959902)); added inframe intron, improved homology
|
Solexa transread data |
2008-05-02 |
| SPBC2D10.15c |
|
old complement(join(2995324..2995579,2995619..2995923,2995971..2996066)), new complement(join(2995324..2995497,2995534..2995579,2995619..2995923,2995971..2996066)); altered first intron, added in frame intron, improved homology |
Solexa transread data |
2008-05-02 |
| SPBC2D10.16 |
|
old join(2996452..2996463,2996509..2996904), new join(2996452..2996463,2996509..2996687,2996738..2996879); added new intron in second exon, which created a new 3rd exon, and identified homology with Cenp-S (was previously sequence orphan)
|
Solexa transread data |
2008-05-02 |
| SPBC16D10.02 |
trm11 |
old join(3588806..3589595,3589639..3589803,3589845..3590123,3590163..3590287), new join(3588806..3589595,3589639..3589803,3589845..3590123,3590163..3590278,3590327..3590386); added new 3' intron/exon |
Solexa transread data |
2008-05-02 |
| SPBC13G1.04c |
|
old complement(3732941..3733762), new complement(join(3732806..3732930,3732994..3733762)); added new 3' intron and exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPBC31F10.12 |
|
old join(3773353..3773525,3773581..3773678,3773795..3773999,3774059..3774116,3774192..3774212), new join(3773308..3773318,3773373..3773525,3773581..3773678,3773795..3773999,3774059..3774116,3774192..3774212); added new 5' intron and exon |
Solexa transread data |
2008-05-02 |
| SPBC21C3.07c |
|
old complement(join(3807920..3808607,3808665..3808795), new complement(join(3807714..3807783,3807831..3807891,3807946..3808607,3808665..3808795)); added two 3' exons
|
Solexa transread data |
2008-05-02 |
| SPBPB2B2.18 |
|
old join(4502439..4502463,4502712..4502857,4503068..4503286,4503527..4503664), new join(4502692..4502725,4502787..4502857,4503068..4503286,4503527..4503664); changed 5' intron/exon |
Solexa transread data |
2008-05-02 |
| SPCC736.12c |
mmi1 |
old complement(join(338026..338178,338232..338347,338395..339354,339483..339567)), new complement(join(337829..337985,338030..338178,338232..338347,338395..339354,339483..339567); added 3' exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPCC16C4.01 |
sif2 |
old join(658832..659139,659223..659488,659567..659628,659709..660413), new join(658832..659139,659223..659488,659567..659628,659709..660197,660298..660322); added 3' intron which changed frame of final exon, shorter product, improved homology |
Solexa transread data |
2008-05-02 |
| SPCC16C4.16c |
|
old complement(join(697862..698127 , 698180..698399)), new complement(join(697605..697752,697875..698127,698180..698399)); added 3' intron/exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPCC1020.11c |
|
old join(757365..757424,757506..757802), new join(757365..757424,757506..757761,757851..757861); added 3'intron/exon |
Solexa transread data |
2008-05-02 |
| SPCC1442.08c |
cox17 |
old complement(join(1781505..1781563,1781637..1781744,1781830..1781914)), new complement(join(1781505..1781563,1781637..1781744,1781830..1781855,1781920..1781935,1781981..1782032)); added 2 small 5' exons, improved homology
|
Solexa transread data |
2008-05-02 |
| SPCC1620.09c |
tfg1 |
old complement(join(2161527..2162363,2162405..2162500,2162584..2163123)), new complement(join(2161331..2161515,2161565..2162363,2162405..2162500,2162584..2163123)); added 5' exon, improved homology |
Solexa transread data |
2008-05-02 |
| SPCC1620.10 |
cwf26 |
old 2163205..2164118, new join(2163205..2164118,2164159..2164165); added 3' exon encoding single methionine
|
Solexa transread data |
2008-05-02 |
| SPAC15A10.12c |
|
old complement(3709451..3709804), new complement(join(3709206..3709346,3709499..3709804)); |
Solexa transread data |
2008-05-02 |
| SPAPB18E9.01 |
|
old join(3974310..3974485,3974541..3974629,3974674..3974775,3974879..3975132,3975193..3975429,3975485..3975832,3975882..3975983), new join(3974310..3974485,3974541..3974629,3974674..3974775,3974879..3975132,3975193..3975429,3975485..3975832,3975882..3975962,3976014..3976079); added small 3' exon, improved homology
|
Solexa transread data |
2008-05-02 |
| SPBC16D10.10 |
|
old join(3618117..3618179,3618228..3618617,3618658..3618702,3618747..3618971,3619077..3619321,3619366..3619540), new join(3618117..3618179,3618228..3618617,3618658..3618702,3618747..3618918,3618956..3619071,3619113..3619321,3619366..3619540); changed 2 introns (existing 4 and 5) to create a new exon 5, improved homology |
Solexa transread data |
2008-05-02 |
| SPAC1093.03 |
|
old join(4613627..4613686,4613723..4614081,4614152..4614378,4614438..4614954,4614996..4616331), new join(4613627..4613686,4613723..4614081,4614164..4614378,4614438..4614954,4614996..4616331); improved distance between branch and acceptor, intron 2
|
Solexa intron data |
2008-05-02 |
| SPAC1142.01 |
|
old join(3625447..3625460,3625555..3627544), new 3625574..3627544; removed 5' exon and trimmed to new Met, improved homology |
Solexa intron data |
2008-05-02 |
| SPAC11D3.07c |
|
old complement(join(118195..119827,119930..120108)), new complement(118195..120108); removed in-frame splice, not required or supported
|
Solexa intron data |
2008-05-02 |
| SPAC1751.02c |
|
old complement(join(385755..385887,385938..386043,386107..386179,386296..386310)), new complement(join(385755..385887,385938..386043,386107..386149)); remove 5' exon, trimmed to new Met, improved homology |
Solexa intron data |
2008-05-02 |
| SPAC1B3.10c |
|
old complement(join(4945933..4945984,4946094..4948084)), new complement(4946090..4948084); removed 3' exon, unsupported
|
Solexa intron data |
2008-05-02 |
| SPAC23H3.04 |
|
old join(2499035..2499164,2499325..2499353,2499443..2499824,2499875..2500236), new join(2499035..2499164,2499160..2499353,2499443..2499824,2499875..2500236); changed 5' 1st and 2nd exon, improved homology |
Solexa intron data |
2008-05-02 |
| SPAC26H5.04 |
|
old join(4122149..4123354,4123535..4124518), new 4122149..4124518; removed unsupported in frame splice |
Solexa intron data |
2008-05-02 |
| SPAC2C4.06c |
|
old complement(join(4269367..4270554,4270587..4270593,4270638..4270674,4270736..4270871)), new complement(join(4269367..4270554,4270631..4270674,4270736..4270871)); replaced 2 internal exons with a different singe exon |
Solexa intron data |
2008-05-02 |
| SPAC328.05 |
|
old join(3484695..3484698,3484752..3485065,3485241..3485342,3485382..3485528,3485582..3485807,3485910..3485974,3486056..3486502), new join(3484695..3484698,3484752..3485065,3485241..3485342,3485382..3485528,3485582..3485974,3486056..3486502); removed inframe splice (exon 5), unsupported |
Solexa intron data |
2008-05-02 |
| SPAC3A12.05c |
|
old complement(join(1426213..1427148,1427189..1429617,1429709..1429836,1429882..1429913)), new complement(join(1426213..1427148,1427189..1429617,1429709..1429830,1429882..1429913)); improved distance beteen branch and acceptor |
Solexa intron data |
2008-05-02 |
| SPAC589.02c |
|
old complement(join(3095075..3098590,3098626..3098775,3098878..3098883)), new complement(join(3095075..3098590,3098626..3098781,3098878..3098883)); improved branch/acceptor for 1st intron |
Solexa intron data |
2008-05-02 |
| SPAC6F12.08c |
|
old complement(join(1322439..1323955,1323999..1324140,1324195..1324234,1324299..1324336)), new complement(join(1322439..1323955,1323999..1324140,1324195..1324252,1324299..1324336)); improved branch acceptor for intron 1 |
Solexa intron data |
2008-05-02 |
| SPAC8C9.19 |
|
old join(3660430..3660438,3660491..3660556,3660607..3660713,3660784..3660886), new join(3660430..3660438,3660491..3660556,3660607..3660717); deleted final exon, unsupported, improved length and alignment to orthologs |
Solexa intron data |
2008-05-02 |
| SPAC9G1.13c |
|
old complement(join(1995208..1996148,1996325..1996413,1996478..1996683)), new complement(join(1995208..1996148,1996191..1996268,1996325..1996413,1996478..1996683)); added a new 3rd exon, improved homology |
Solexa intron data |
2008-05-02 |
| SPAPB17E12.03 |
|
old join(1271889..1271972,1272015..1272386,1272483..1272962), new join(1271889..1271972,1272015..1272962); removed inframe splice, unsupported, improved homology |
Solexa intron data |
2008-05-02 |
| SPBC15D4.13c |
|
old complement(join(3032492..3032710,3032761..3032822,3032865..3033222)), new complement(join(3032492..3032710,3032761..3032822,3032889..3033222)); better donor for first intron |
Solexa intron data |
2008-05-02 |
| SPBC16C6.03c |
|
old complement(join(4332356..4332454,4332746..4333123)), new complement(4332698..4333123); final exon, unsupported removed |
Solexa intron data |
2008-05-02 |
| SPBC19G7.06 |
|
old join(2359429..2359479 , 2359547..2359693 , 2359845..2359928 , 2360001..2361092), new join(2359429..2359479,2359547..2359693,2359845..2359928,2360064..2361092); altered 3rd intron branch acceptor to agree with published |
Solexa intron data |
2008-05-02 |
| SPBC21.03c |
|
old complement(join(3217985..3218424,3218467..3218491,3218693..3218947)), new complement(join(3217985..3218424,3218462..3218491,3218580..3218651,3218704..3218947)); changed 2 internal introns, now agrees with transread data, but still potential to be incorrect |
Solexa intron data |
2008-05-02 |
| SPBC32H8.08c |
|
old complement(join(1465811..1466035,1466138..1467057,1467311..1467456,1467514..1467539)), new complement(join(1465811..1466035 , 1466138..1467057 , 1467311..1467431)); removed 5' intron/exon (unsupported) and trimmed to next met |
Solexa intron data |
2008-05-02 |
| SPBP35G2.06c |
|
old complement(join(973049..974181,974223..974577,974617..975002,975044..975137,975172..976632)), new complement(join(973049..974181,974223..974577,974647..975002,975044..975137,975172..976632)); changed donor for intron 3 |
Solexa intron data |
2008-05-02 |
| SPCC1393.06c |
|
old complement(join(804627..805627,805678..805800,805907..806009)), new complement(join(804627..805627 , 805678..805800 , 805849..805921 , 805965..806009)); changed first intron and added a new 2nd exon, improved homology, also confirmed by transread data |
Solexa intron data |
2008-05-02 |
| SPCC1450.14c |
|
old complement(join(1759295..1760998,1761117..1761128)), new complement(1759295..1760998); deleted first exon, unsupported |
Solexa intron data |
2008-05-02 |
| SPCC1827.02c |
|
old complement(join(2377039..2378078,2378197..2378221)), new complement(2377039..2378127); deleted first exon, unsupported |
Solexa intron data |
2008-05-02 |
| SPCC63.10c |
|
old complement(join(854651..855695,855766..855800,855839..855926,855984..856213)), new complement(join(854651..855926,855984..856213)); deleted 2nd and 3rd introns, were not required or supported |
Solexa intron data |
2008-05-02 |
| SPAC6F6.16c |
|
merged with SPAC6F6.18c and five introns added |
PMID:18535244 |
2008-06-09 |
| SPCC962.05 |
|
old join(554521..554722,554792..556200), new join(554521..554744,554865..556200) |
pers. comm. Matthew O'Connell |
2008-05-02 |
| SPCC338.08 |
ctp1 |
old coordinates complement(1358962..1359819), new complement(join(1358885..1359082,1359121..1359819)); further altered to complement(join(1358891..1359082,1359127..1359819)) in accordance with paper |
pers. comm. Paul Russell; PMID:18378696 |
2008-01-11;2008-06-19 |
| SPBC2G2.09c |
crs1 |
added new C-terminal exon, deleted exon 3452822..3452877, extended intron 2 by 4 nucleotides |
pers. comm. Charley Chahwan |
2008-07-09 |
| SPBC31F10.08 |
mde2 |
old coordinates 3764820..3765449, new join(3764820..3765437,3765491..3765709) |
pers. comm. Charley Chahwan |
2008-07-18 |
| SPBC651.06 |
mug166 |
merged with SPBC651.07 |
pers. comm. Charley Chahwan |
2008-07-26 |
| SPBC18E5.14c |
|
merged with SPBC18E5.09c |
pers. comm. Charley Chahwan |
2008-07-31 |
| SPAC959.05c |
|
merged with SPAC959.06c; splicing is tentative |
pers. comm. Charley Chahwan |
2008-08-15 |
