Motif Search
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Motif Search |
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Search examples:
| CADR | will find | CADR |
| CA[DE]R | will find | CADR/CAER |
| CA...R | will find | CAXXXR |
| CA.+R | will find | CA(any number of one or more amino acids)R |
| ^ME | will find | proteins beginning with ME |
| LAA$ | will find | proteins terminating LAA |
| ^.{1,20}MCA | will find | proteins with MCA in the first 20 amino acids |
Amino acid group codes (Please note these options do not work in combination with square brackets):
| AA group | Code | Amino acids |
|---|---|---|
| acidic | 0 | DE |
| alcohol | 1 | ST |
| aliphatic | 2 | AGILV |
| aromatic | 3 | FHWY |
| basic | 4 | KRH |
| charged | 5 | DEHKR |
| hydrophobic | 6 | AVILMFYW |
| hydrophilic | 7 | KRHDENQ |
| polar | 8 | CDEHKNQRST |
| small | 9 | ACDGNPSTV |
| tiny | B | AGS |
| turnlike | Z | ACDEGHKNQRST |
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